With help from Angel, the X-Men are able to move back into the rebuilt mansion. Forge has been brought to the team to repair Cerebro and the Blackbird. The telepathic Emma Frost, the beautiful former headmistress of the Massachusetts Academy, requests to join the X-Men in order to help find Professor X. Wolverine is suspicious at in the beginning but reluctantly agrees, believing that Emma only has intentions to take control of Cerebro. Emma Frost is able to locate Professor X in Magneto's controlled mutant nation of Genosha. Now with Cyclops back in action, Wolverine leads the X-Men on a mission into the enemy territory in order to retrieve their lost mentor.

Professor X shows Wolverine a future vision of a destroyed Africa and reveals that Storm is the one who destroyed it. It isn't long before the Shadow King tries to take control of Storm's body. At the end of the episode Storm rejoins the X-Men.

Magma is being chased by the M.R.D. In the middle of a road she turns to a burning lava-like being and the cars suddenly stop around her. Wolverine rescues Magma from the M.R.D. and uses an ability-inhibitor collar built by Forge to help control her mutant abilities. When Wolverine asks for the collar back, she is reluctant to take it off but finally does so. Meanwhile, Dr. Sybil Zane hires Gambit to steal that collar from the X-Men for Senator Kelly and it is up to Wolverine to get it back. Gambit attacks Wolverine in his laboratory with kinetically charged cards, he admits to Wolverine that he has been hired for cash, but Wolverine sets his money on fire and offers him double the amount, if he helps discovering whom he is working for. In the end Wolverine manages to get back the collar.