An invention called the "evil-scope" allows the Skylanders to stop evil before it happens, but all the evil energy collects in a ball and traps Spyro.

After Crash Bandicoot is somehow transported into their world, the Skylanders have to help him get home by finding a dark relic.

When Eon falls seriously ill, the Skylanders must race to find a light energy source to heal him. Meanwhile, the Doom Raiders attack the academy.